Installation

Install using PyPI

pip install mitotnt

Download the repository or git clone https://github.com/pylattice/mitoTNT.git to use the test data and notebook.

Supporting Software

• MitoGraph for mitochondria segmentation and skeletonization.
  Note that MitoGraph is currently only available on MacOS and Windows, but you can build it from source on Linux.
  Please contact ziw056@ucsd.edu if you need the Linux build.

• ChimeraX for the visualization of MitoGraph segmentation and MitoTNT tracking