Installation

Install using PyPI

pip install mitotnt

Download the repository or git clone https://github.com/pylattice/mitoTNT.git to use the test data and notebook.

Supporting Software

• MitoGraph for mitochondria segmentation and skeletonization.
  Note that the original MitoGraph is currently only available on MacOS and Windows, but you can build it from source on Linux. Please contact ziw056@ucsd.edu if you need the Linux build. We have also developed a Python-based GPU-accelerated MitoGraph that is cross-platform. This version has been validated against the original CPU implementation.

• ChimeraX for the visualization of MitoGraph segmentation and MitoTNT tracking